Multivalent state transitions shape the intratumoral composition of small cell lung carcinoma
Gopal P, Petty A, Rogacki K, Bera T, Bareja R, Peacock CD, Abazeed ME. Sci Adv. 2022. 14;8(50).
The mutational landscape of cancer’s vulnerability to ionizing radiation
Gopal, P., Yard, B.D., Petty, A., Lal, J.C., Bera, T.K., Hoang, T.Q., Buhimschi, A.D., & Abazeed, M.E. Clin Cancer Res. 2022 Oct 12:CCR-22-1914. doi: 10.1158/1078-0432.CCR-22-1914.
Image-based deep neural network for individualizing radiotherapy dose is transportable across health systems
Randall J, Teo PT, Lou B, Shah J, Patel J, Kamen A, Abazeed ME. JCO Clin Cancer Inform. 2023 Jan;7:e2200100.
An image-based deep learning framework for individualizing radiation dose: a retrospective analysis of outcome prediction
Lou, B., Doken, S., Zhuang, T., Wingerter, D., Gidwani, M., Mistry, N., Ladic, L., Kamen, A. & Abazeed, M.E., Jul 2019, In : Lancet Digital Health. 1, 3, p. e136-e147
Cellular and genetic determinants of the sensitivity of cancer to α-particle irradiation
Yard, B. D., Gopal, P., Bannik, K., Siemeister, G., Hagemann, U. B. & Abazeed, M. E., Nov 1 2019, In : Cancer Research. 79, 21, p. 5640-5651 12 p.
Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers
Gopal, P., Sarihan, E. I., Chie, E. K., Kuzmishin, G., Doken, S., Pennell, N. A., Raymond, D. P., Murthy, S. C., Ahmad, U., Raja, S., Almeida, F., Sethi, S., Gildea, T. R., Peacock, C. D., Adams, D. J. & Abazeed, M. E., Dec 1 2019, In : Nature communications. 10, 1, 5143.
A genetic basis for the variation in the vulnerability of cancer to DNA damage
Yard, B. D., Adams, D. J., Chie, E. K., Tamayo, P., Battaglia, J. S., Gopal, P., Rogacki, K., Pearson, B. E., Phillips, J., Raymond, D. P., Pennell, N. A., Almeida, F., Cheah, J. H., Clemons, P. A., Shamji, A., Peacock, C. D., Schreiber, S. L., Hammerman, P. S. & Abazeed, M.E. Apr 25 2016, In : Nature communications. 7, 11428.
Characterizing genomic alterations in cancer by complementary functional associations
Kim, J. W., Botvinnik, O. B., Abudayyeh, O., Birger, C., Rosenbluh, J., Shrestha, Y., Abazeed, M. E. & 15 others, May 1 2016, In : Nature biotechnology. 34, 5, p. 539-546.
Case study: patient-derived clear cell adenocarcinoma xenograft model longitudinally predicts treatment response
Vargas R, Gopal P, Kuzmishin GB, DeBernardo R, Koyfman SA, Jha BK, Mian OY, Scott J, Adams DJ, Peacock CD, Abazeed M.E. NPJ Precis Oncol. 2018 Jul 11;2:14.